If the TSB doesn't help or if others need different fixes, I found various other members fixes (5 of them) for water leaks and thought I would post them here for future use, since this thread has the appropriate title:
1)
"If you have the leaking I am talking about after you install the
hardtop put a piece of tape (NOT ducttape since it will leave glue behind) covering the spot by the drivers window where the
hardtop attaches to the 'A' pillar rubber. The problem is that by design water travels through the inside of the gasket and for some odd reason the drivers side becomes lower and water drips right at the point where the 2 gaskets connect"
2)
"Check the rubber gasket where the top meets the windshield. The gasket on the windshield should be outside of the one from the top.
I had the same problem on one side and found that and have had no problems since. The water drains down from the top and if the windshield gasket is not around the top gasket the water comes inside otherwise it goes down the windshield and out of the car."
3)
"As for the leaking
hard top: try reprogramming the window drop. Do it while the door is shut and the top is on. That may make it seal tighter. If it still leaks, try again with the door open."
4)
"Is the window drop feature working correctly? Recalibrate it anyway just to make sure. Or, Remove the top and check for any damaged gaskets on both the top and the car. Clean them all. Put the top back on and check again for leaks."
5)
"If you put the top on and off frequently, a short term quick fix, with the window down simply put a small piece of duct tape over the seam where the top connects to the car pilar rubber (assuming this is where you are getting water) The car is designed for water to flow through that gasket and down to the fender drain, so the problem is the connection point. Prior to installing my
hardtop I usually push REAL hard upward on the pillar rubber. (At the factory they used a rubber hammer on it."